Download MendeleyCrystal structure (type-3) of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
Biswas, A., Jeyakanthan, J., Sekar, K.To be published.
4RZX
Crystal structure (type-3) of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
- PDB DOI: https://doi.org/10.2210/pdb4RZX/pdb
- Classification: TRANSFERASE
- Organism(s): Sulfurisphaera tokodaii str. 7
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-12-26 Released: 2015-12-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.259
- R-Value Work: 0.201
- R-Value Observed: 0.204
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable thymidylate kinase | 213 | Sulfurisphaera tokodaii str. 7 | Mutation(s): 0 Gene Names: STK_15430, tmk EC: 2.7.4.9 |  | |
UniProt | |||||
Find proteins for Q970Q8 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q970Q8 Go to UniProtKB: Q970Q8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q970Q8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A], E [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| NI Query on NI | D [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.259
- R-Value Work: 0.201
- R-Value Observed: 0.204
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.934 | α = 90 |
| b = 63.222 | β = 90 |
| c = 138.565 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2015-12-30 Deposition Author(s): Biswas, A., Jeyakanthan, J., Sekar, K.
Revision History (Full details and data files)
- Version 1.0: 2015-12-30
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
