4RZ7

Crystal Structure of PVX_084705 with bound PCI32765

• PDB DOI: https://doi.org/10.2210/pdb4RZ7/pdb

• Classification: TRANSFERASE
• Organism(s): Plasmodium vivax Sal-1
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2014-12-18 Released: 2015-01-14 
• Deposition Author(s): Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M., Amani, M., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.238 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 

Literature

Crystal Structure of PVX_084705 with bound PCI32765

Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M., Amani, M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 97.17 kDa 
• Atom Count: 6,491 
• Modelled Residue Count: 801 
• Deposited Residue Count: 847 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cGMP-dependent protein kinase, putative	A	847	Plasmodium vivax Sal-1	Mutation(s): 0  Gene Names: PVX_084705
UniProt
Find proteins for A5K0N4 (Plasmodium vivax (strain Salvador I)) Explore A5K0N4  Go to UniProtKB:  A5K0N4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1E8	B [auth A]	1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one C25 H24 N6 O2 XYFPWWZEPKGCCK-GOSISDBHSA-N
UNX	AA [auth A], AB [auth A], BA [auth A], BB [auth A], C [auth A], CA [auth A], CB [auth A], D [auth A], DA [auth A], DB [auth A], E [auth A], EA [auth A], EB [auth A], F [auth A], FA [auth A], FB [auth A], G [auth A], GA [auth A], GB [auth A], H [auth A], HA [auth A], HB [auth A], I [auth A], IA [auth A], IB [auth A], J [auth A], JA [auth A], JB [auth A], K [auth A], KA [auth A], KB [auth A], L [auth A], LA [auth A], LB [auth A], M [auth A], MA [auth A], MB [auth A], N [auth A], NA [auth A], NB [auth A], O [auth A], OA [auth A], OB [auth A], P [auth A], PA [auth A], PB [auth A], Q [auth A], QA [auth A], R [auth A], RA [auth A], S [auth A], SA [auth A], T [auth A], TA [auth A], U [auth A], UA [auth A], V [auth A], VA [auth A], W [auth A], WA [auth A], X [auth A], XA [auth A], Y [auth A], YA [auth A], Z [auth A], ZA [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.238 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 192.556	α = 90
b = 117.422	β = 95.26
c = 68.219	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
APS	data collection
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-01-14 
Deposition Author(s): Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., El Bakkouri, M., Amani, M., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2015-01-14
  Type: Initial release
  
• Version 1.1: 2015-03-11
  Changes: Non-polymer description
• Version 1.2: 2015-06-24
  Changes: Database references, Structure summary
• Version 1.3: 2015-07-22
  Changes: Structure summary
• Version 1.4: 2017-11-22
  Changes: Advisory, Refinement description
• Version 1.5: 2024-02-28
  Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary