4OO6

Crystal structure of human KAP-beta2 bound to the NLS of HCC1 (Hepato Cellular Carcinoma protein 1)

• PDB DOI: https://doi.org/10.2210/pdb4OO6/pdb

• Classification: Transport Protein/RNA Binding Protein
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-01-30 Released: 2014-02-12 
• Deposition Author(s): Sampathkumar, P., Brower, A., Soniat, M., Bonanno, J., Hillerich, B., Seidel, R.D., Rout, M.P., Chook, Y.M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Nucleocytoplasmic Transport: a Target for Cellular Control (NPCXstals)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.238 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 

Literature

Crystal structure of human KAP-beta2 bound to the NLS of HCC1 (Hepato Cellular Carcinoma protein 1)

Sampathkumar, P., Brower, A., Soniat, M., Bonanno, J., Hillerich, B., Seidel, R.D., Rout, M.P., Chook, Y.M., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 100.35 kDa 
• Atom Count: 6,753 
• Modelled Residue Count: 844 
• Deposited Residue Count: 881 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transportin-1	A	854	Homo sapiens	Mutation(s): 0  Gene Names: KPNB2, MIP1, TNPO1, TRN
UniProt & NIH Common Fund Data Resources
Find proteins for Q92973 (Homo sapiens) Explore Q92973  Go to UniProtKB:  Q92973
PHAROS:  Q92973 GTEx:  ENSG00000083312

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein 39	B	27	Homo sapiens	Mutation(s): 0  Gene Names: HCC1, RBM39, RNPC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q14498 (Homo sapiens) Explore Q14498  Go to UniProtKB:  Q14498
PHAROS:  Q14498 GTEx:  ENSG00000131051

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.238 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.584	α = 90
b = 162.152	β = 90
c = 68.501	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-02-12 
Deposition Author(s): Sampathkumar, P., Brower, A., Soniat, M., Bonanno, J., Hillerich, B., Seidel, R.D., Rout, M.P., Chook, Y.M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Nucleocytoplasmic Transport: a Target for Cellular Control (NPCXstals)

Revision History  

• Version 1.0: 2014-02-12
  Type: Initial release
  
• Version 1.1: 2017-07-26
  Changes: Source and taxonomy
• Version 1.2: 2023-09-20
  Changes: Data collection, Database references, Refinement description