4I1F

Structure of Parkin-S223P E3 ligase

Structural Biology Knowledgebase: 4I1F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I1F

Classification: LIGASE

Total Structure Weight: 37109.17

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase parkin A 325 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: R0RBR (UNP residues 141-465)
Mutation: S223P
Gene Name(s): PARK2 Gene View PRKN

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.205
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.96 α = 90.00
b = 133.15 β = 90.00
c = 65.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-20
  • Released Date: 2013-06-19
  • Deposition author(s): Lougheed, J.C., Brecht, E., Yao, N.H.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update