4H32

The crystal structure of the hemagglutinin H17 derived the bat influenza A virus

• PDB DOI: https://doi.org/10.2210/pdb4H32/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2012-09-13 Released: 2013-07-10 
• Deposition Author(s): Sun, X., Shi, Y., Lu, X., He, J., Gao, F., Yan, J., Qi, J., Gao, G.F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.263 
• R-Value Work: 0.217 
• R-Value Observed: 0.219 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 6-mer - A3B3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 6-mer - A3B3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 335.61 kDa 
• Atom Count: 23,961 
• Modelled Residue Count: 2,943 
• Deposited Residue Count: 2,946 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	A, C, E, G, I, K	320	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))	Mutation(s): 0  Gene Names: HA
UniProt
Find proteins for H6QM93 (Influenza A virus) Explore H6QM93  Go to UniProtKB:  H6QM93

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemagglutinin	B, D, F, H, J, L	171	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))	Mutation(s): 0  Gene Names: HA
UniProt
Find proteins for H6QM93 (Influenza A virus) Explore H6QM93  Go to UniProtKB:  H6QM93

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	M [auth A], N [auth A], O [auth C], P [auth E], Q [auth G], R [auth G], S [auth H], T [auth I], U [auth K]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 0.263 
• R-Value Work: 0.217 
• R-Value Observed: 0.219 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.149	α = 90
b = 101.84	β = 90
c = 497.091	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASES	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-07-10 
Deposition Author(s): Sun, X., Shi, Y., Lu, X., He, J., Gao, F., Yan, J., Qi, J., Gao, G.F.

Revision History  

• Version 1.0: 2013-07-10
  Type: Initial release
  
• Version 1.1: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Database references, Derived calculations, Structure summary