4GGQ

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with CJ40

Structural Biology Knowledgebase: 4GGQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GGQ

Classification: Isomerase protein binding

Total Structure Weight: 94160.68

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase A, B, C, D 209 Saccharomyces cerevisiae Burkholderia pseudomallei EC#: 5.2.1.8 IUBMB
Fragment: Q12306 residues 13-98, Q3JK38 residues 2-113
Gene Name(s): SMT3 YDR510W D9719.15 BURPS1710b_A0907
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
861
Query on 861

A, B, C, D 3-(3,4,5-trimethoxyphenyl)propyl (2S)-1-(benzylsulfonyl)piperidine- 2-carboxylate
C25 H33 N O7 S
WUVVOAPMLQTLBJ-NRFANRHFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 34.44 α = 95.07
b = 76.15 β = 90.13
c = 76.35 γ = 92.65

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-07
  • Released Date: 2012-08-15
  • Deposition author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History

  • 2014-03-12
    Type: Citation | Details: Citation update