4FM5
X-ray structure of des-methylflurbiprofen bound to murine COX-2
- PDB DOI: https://doi.org/10.2210/pdb4FM5/pdb
- Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
- Organism(s): Mus musculus
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Deposited: 2012-06-15 Released: 2012-08-29 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.81 Å
- R-Value Free: 0.290 
- R-Value Work: 0.240 
- R-Value Observed: 0.243 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Prostaglandin G/H synthase 2 | 604 | Mus musculus | Mutation(s): 0  Gene Names: Ptgs2, Cox-2, Cox2, Pghs-b, Tis10 EC: 1.14.99.1 | ||
UniProt | |||||
Find proteins for Q05769 (Mus musculus) Explore Q05769  Go to UniProtKB:  Q05769 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q05769 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | K [auth A], N [auth B], R [auth C], U [auth D] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
BOG Query on BOG | I [auth A] J [auth A] M [auth B] P [auth C] Q [auth C] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N | |||
DF0 Query on DF0 | L [auth A], O [auth B], S [auth C], V [auth D] | (2-fluorobiphenyl-4-yl)acetic acid C14 H11 F O2 ZLLZRKQQNGBXRD-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.81 Å
- R-Value Free: 0.290 
- R-Value Work: 0.240 
- R-Value Observed: 0.243 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 181.632 | α = 90 |
b = 135.696 | β = 90 |
c = 125.15 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
SCALA | data scaling |
Entry History 
Deposition Data
- Released Date: 2012-08-29  Deposition Author(s): Xu, S., Banerjee, S., Windsor, M.A., Marnett, L.J.
Revision History (Full details and data files)
- Version 1.0: 2012-08-29
Type: Initial release - Version 1.1: 2012-12-19
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-13
Changes: Data collection, Database references, Refinement description, Structure summary