4F8R

Bacillus DNA Polymerase I Large Fragment complex 7

Structural Biology Knowledgebase: 4F8R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F8R

Classification: Transferase / DNA

Total Structure Weight: 148797.16


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, D 592 Geobacillus kaustophilus EC#: 2.7.7.7 IUBMB
Fragment: unp residues 287-898
Mutation: D598A, F710Y, R823H
Gene Name(s): polA GK2730
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3') B, E 9 Synthetic construct DNA Primer Strand
DNA (5'-D(*CP*AP*TP*TP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3') C, F 13 Synthetic construct DNA Template Strand

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DDG
Query on DDG
B, E DNA LINKING C10 H14 N5 O6 P DG

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.67 α = 90.00
b = 109.37 β = 90.00
c = 150.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-17
  • Released Date: 2013-08-07
  • Deposition author(s): Wang, W., Beese, L.S.

Revision History

No revisions since initial release