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Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium
DOI:10.2210/pdb4dsj/pdb   NDB ID: NA1627
4DSJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 146209.24
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 579
    Chains: A, B
    EC#: 2.7.7.7   
    Fragment: RESIDUES 298-876
    Mutation: A598D
    Organism: Geobacillus stearothermophilus
    UniProtKB: Protein Feature View | Search PDB | E1C9K5  
    Molecule: DNA
    Polymer: 2 Type: dna Length: 12
    Chains: C, E
    Molecule: dGTP
    Polymer: 3 Type: dna Length: 10
    Chains: D, F
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ht3  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP 
    4DSI  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, Se-dGTP and Calcium 
    4dsk  DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, PPi and Calcium 
    4dsl  Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    DGT
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    DGT C10 H16 N5 O13 P3
    2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
    DGT:4DSJ
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1627
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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