4DPV

PARVOVIRUS/DNA COMPLEX

Structural Biology Knowledgebase: 4DPV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DPV

Classification: Virus / DNA [ VIPERdb ]

Total Structure Weight: 68087.67


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (PARVOVIRUS COAT PROTEIN) Z 584 Carnivore protoparvovirus 1 Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3') N 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

N, Z MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Observed:
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 263.21 α = 90.00
b = 349.01 β = 90.82
c = 267.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-01
  • Released Date: 1997-04-01
  • Deposition author(s): Chapman, M.S., Rossmann, M.G.
  • Previous versions: 2DPV 3DPV

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4