4D51

Crystal structure of CymA from Klebsiella oxytoca


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 4D51

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 38319.99

Macromolecule Entities
Molecule Chains Length Organism Details
CYMA A 324 Klebsiella oxytoca Details: NO HISTIDINE TAG
Gene Name(s): cymA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: CymA monomeric outer membrane protein (NHis-SeMet)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.214
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 59.62 α = 90.00
b = 228.12 β = 90.00
c = 60.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-11-01
  • Released Date: 2015-06-03
  • Deposition author(s): vandenBerg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.

Revision History

  • Version 1_0: 2015-06-03

    Type: Initial release

  • Version 1_1: 2015-06-10

    Type: Database references, Source and taxonomy

  • Version 1_2: 2015-06-24

    Type: Database references