Download MendeleyCrystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) from Pseudomonas aeruginosa
Abendroth, J., Lorimer, D.D., Edwards, T.E.To be published.
4YWJ
Crystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb4YWJ/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-03-20 Released: 2015-04-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.168
- R-Value Observed: 0.169
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4-hydroxy-tetrahydrodipicolinate reductase | 276 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: dapB, PA4759 EC: 1.17.1.8 |  | |
UniProt | |||||
Find proteins for P38103 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P38103 Go to UniProtKB: P38103 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P38103 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | C [auth A], G [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| PGE Query on PGE | D [auth A], H [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| BU1 Query on BU1 | E [auth A], I [auth B] | 1,4-BUTANEDIOL C4 H10 O2 WERYXYBDKMZEQL-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.168
- R-Value Observed: 0.169
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M34YWJ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.01 | α = 90 |
| b = 101.5 | β = 90 |
| c = 144.51 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| PHASER | phasing |
| ARP | model building |
| Coot | model building |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2015-04-01 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2015-04-01
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy
