4YQX
Mouse IL-2 Bound to JES6-1 scFv Fragment
- PDB DOI: https://doi.org/10.2210/pdb4YQX/pdb
- Classification: CYTOKINE/IMMUNE SYSTEM
- Organism(s): Rattus norvegicus, Mus musculus
- Expression System: Trichoplusia ni, Escherichia coli
- Mutation(s): No 
- Deposited: 2015-03-13 Released: 2015-07-01 
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.83 Å
- R-Value Free: 0.204 
- R-Value Work: 0.170 
- R-Value Observed: 0.171 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
JES6-1 VH domain | A [auth H], D [auth N] | 123 | Rattus norvegicus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
JES6-1 VL domain | B [auth L], E [auth O] | 118 | Rattus norvegicus | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Interleukin-2 | C [auth A], F [auth M] | 130 | Mus musculus | Mutation(s): 0  Gene Names: Il2, Il-2 | |
UniProt | |||||
Find proteins for P04351 (Mus musculus) Explore P04351  Go to UniProtKB:  P04351 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04351 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | G [auth B] | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G63564LA GlyCosmos:  G63564LA |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.83 Å
- R-Value Free: 0.204 
- R-Value Work: 0.170 
- R-Value Observed: 0.171 
- Space Group: P 31 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 99.024 | α = 90 |
b = 99.024 | β = 90 |
c = 198.7 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-07-01  Deposition Author(s): Spangler, J.B., Luca, V.C., Jude, K.M., Garcia, K.C.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01 AI108626 |
Revision History (Full details and data files)
- Version 1.0: 2015-07-01
Type: Initial release - Version 1.1: 2015-07-08
Changes: Source and taxonomy - Version 1.2: 2017-07-26
Changes: Author supporting evidence, Database references, Derived calculations, Source and taxonomy - Version 1.3: 2019-12-11
Changes: Author supporting evidence, Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary