4YNY

Crystal structure of monoclonal anti-human podoplanin antibody NZ-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 4YNY

Classification: IMMUNE SYSTEM

Total Structure Weight: 102108.74

Macromolecule Entities
Molecule Chains Length Organism Details
Heavy chain of antigen binding fragment, Fab A, C 238 Rattus norvegicus
Light chain of antigen binding fragment, Fab B, D 233 Rattus norvegicus

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
B, D L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.168
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 42.88 α = 97.92
b = 57.16 β = 101.53
c = 101.52 γ = 105.37

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-03-11
  • Released Date: 2016-03-02
  • Deposition author(s): Fujii, Y., Kitago, Y., Arimori, T., Takagi, J.

Revision History

  • 2016-04-13
    Type: Database references