4XI5

gHgL of varicella-zoster virus in complex with human neutralizing antibodies


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 4XI5

Classification: Viral Protein / Immune System

Total Structure Weight: 162798.53

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein H A 833 Human alphaherpesvirus 3 Gene Name(s): gH ORF37
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein L B 138 Human alphaherpesvirus 3 Gene Name(s): gL ORF60
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab-94 light chain C 214 Homo sapiens
Fab-94 heavy chain D 283 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.245
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 102.00 α = 90.00
b = 280.55 β = 90.00
c = 175.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-06
  • Released Date: 2015-05-13
  • Deposition author(s): Xing, Y.

Revision History

  • Version 1_0: 2015-05-13

    Type: Initial release

  • Version 1_1: 2015-05-20

    Type: Database references