4WNC

Crystal structure of human wild-type GAPDH at 1.99 angstroms resolution

Structural Biology Knowledgebase: 4WNC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.139

Literature

Macromolecules
Sequence Display for 4WNC

Classification: OXIDOREDUCTASE

Total Structure Weight: 293284.44

Macromolecule Entities
Molecule Chains Length Organism Details
Glyceraldehyde-3-phosphate dehydrogenase A, B, C..., D, E, F, G, OA, B, C, D, E, F, G, O 335 Homo sapiens EC#: 1.2.1.12 IUBMB
Gene Name(s): GAPDH Gene View GAPD CDABP0047 OK/SW-cl.12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, O NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, E, O ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

C, O ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.139
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 132.54 α = 90.00
b = 81.42 β = 90.06
c = 147.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-11
  • Released Date: 2014-12-03
  • Deposition author(s): Garcin, E.D.

Revision History

  • 2015-02-11
    Type: Citation | Details: Citation
  • 2014-12-17
    Type: Citation | Details: Citation