4V61

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.4 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4V61

Classification: RIBOSOME

Total Structure Weight: 2447890.75


Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal Protein S2 AB 231 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S3 AC 218 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S4 AD 201 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S5 AE 308 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S6 AF 168 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): RPS6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S7 AG 155 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps7-A rps7-B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S8 AH 134 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S9 AI 197 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): PRPS9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S10 AJ 197 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Ribosomal Protein S11 AK 140 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S12 AL 123 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps12-A rps12-B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S13 AM 145 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): RPS13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S14 AN 100 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S15 AO 90 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S16 AP 88 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S17 AQ 142 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Ribosomal Protein S18 AR 103 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): RPS18 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S19 AS 92 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Gene Name(s): rps19
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein S20 AT 202 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Ribosomal Protein S21 AU 190 Spinacia oleracea Details: modeled using Escherichia coli 2AVY as template
Ribosomal Protein L1 BD 352 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L2 BE 269 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl2-A rpl2-B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L3 BF 259 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L4 BG 293 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L5 BH 220 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL5 Gene View PrpL5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L6 BI 223 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L9 BJ 197 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L11 BK 224 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L13 BL 250 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L14 BM 121 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L15 BN 257 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L16 BO 135 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L17 BP 205 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L18 BQ 161 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L19 BR 233 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL19 Gene View PRPL19
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L20 BS 119 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl20
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L21 BT 257 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L22 BU 199 Spinacia oleracea Mutation: K126L
Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl22
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L23 BV 198 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L24 BW 191 Spinacia oleracea EC#: 4.2.99.18 IUBMB
Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L27 BX 198 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L28 BY 151 Spinacia oleracea Details: modeled using Thermus thermophilus 2J01 as template
Ribosomal Protein L29 BZ 173 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Ribosomal Protein L31 B1 144 Spinacia oleracea Details: modeled using Thermus thermophilus 2J01 as template
Ribosomal Protein L32 B2 57 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl32
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L33 B3 66 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): rpl33
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L34 B4 152 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL34 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L35 B5 159 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Gene Name(s): RPL35 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L36 B6 104 Spinacia oleracea Details: modeled using Escherichia coli 2AWB as template
Macromolecule Entities
Molecule Chains Length Organism Details
16S rRNA AA 1491 Spinacia oleracea modeled using Escherichia coli 2AVY as template
23S rRNA BA 2810 Spinacia oleracea modeled using Escherichia coli 2AWB as template
5S rRNA BB 117 Spinacia oleracea modeled using Escherichia coli 2AWB as template
4.8S rRNA BC 103 Spinacia oleracea modeled using Escherichia coli 2AWB as template


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.4 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2007-11-09
  • Released Date: 2014-07-09
  • Deposition author(s): Sharma, M.R., Wilson, D.N., Datta, P.P., Barat, C., Schluenzen, F., Fucini, P., Agrawal, R.K.
  • This entry supercedes: 3BBN 3BBO

Revision History

  • Version 1_0: 2014-07-09

    Type: Initial release

  • Version 1_1: 2014-12-10

    Type: Other

  • Version 1_2: 2015-03-25

    Type: Other