Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2
DOI:10.2210/pdb4un4/pdb   NDB ID: NA3069
4UN4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna/rna
    Structure Weight: 197781.59
    Molecule: SGRNA
    Polymer: 1 Type: rna Length: 83
    Chains: A
    Organism: synthetic construct
    Molecule: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
    Polymer: 2 Type: protein Length: 1372
    Chains: B
    EC#: 3.1   
    Mutation: YES
    Organism: Streptococcus pyogenes
    Gene Names: cas9 csn1 SPy_1046
    UniProtKB: Search PDB | Q99ZW2   Protein Feature View
    Molecule: TARGET DNA STRAND PROXIMAL FRAGMENT
    Polymer: 3 Type: dna Length: 11
    Chains: C
    Organism: synthetic construct
    Molecule: NON-TARGET DNA STRAND
    Polymer: 4 Type: dna Length: 11
    Chains: D
    Organism: synthetic construct
    Molecule: TARGET DNA STRAND DISTAL FRAGMENT
    Polymer: 5 Type: dna Length: 17
    Chains: E
    Organism: synthetic construct
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 2
    Scientific Name: Streptococcus pyogenes   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4UN3   CRYSTAL STRUCTURE OF CAS9 BOUND TO PAM-CONTAINING DNA TARGET 
    4UN5   CRYSTAL STRUCTURE OF CAS9 BOUND TO PAM-CONTAINING DNA TARGET CONTAINING MISMATCHES AT POSITIONS 1-3 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA3069
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
Downloadable viewers: