4UG0

STRUCTURE OF THE HUMAN 80S RIBOSOME


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.6 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4UG0

Classification: RIBOSOME

Total Structure Weight: 3835517.00


Macromolecule Entities
Molecule Chains Length Organism Details
60S RIBOSOMAL PROTEIN L8 LA 257 Homo sapiens Gene Name(s): RPL8 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L3 LB 403 Homo sapiens Gene Name(s): RPL3 Gene View OK/SW-cl.32
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L4 LC 427 Homo sapiens Gene Name(s): RPL4 Gene View RPL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L5 LD 297 Homo sapiens Gene Name(s): RPL5 Gene View MSTP030
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L6 LE 288 Homo sapiens Gene Name(s): RPL6 Gene View TXREB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L7 LF 248 Homo sapiens Gene Name(s): RPL7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L7A LG 266 Homo sapiens Gene Name(s): RPL7A Gene View SURF-3 SURF3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L9 LH 192 Homo sapiens Gene Name(s): RPL9 Gene View OK/SW-cl.103 RPL9P7 RPL9P8 RPL9P9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L10-LIKE LI 214 Homo sapiens Gene Name(s): RPL10L Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L11 LJ 178 Homo sapiens Gene Name(s): RPL11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L13 LL 211 Homo sapiens Gene Name(s): RPL13 Gene View BBC1 OK/SW-cl.46
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L14 LM 215 Homo sapiens Gene Name(s): RPL14 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L15 LN 204 Homo sapiens Gene Name(s): RPL15 Gene View EC45 TCBAP0781
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L13A LO 203 Homo sapiens Gene Name(s): RPL13A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L17 LP 184 Homo sapiens Gene Name(s): RPL17 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L18 LQ 188 Homo sapiens Gene Name(s): RPL18 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L19 LR 196 Homo sapiens Gene Name(s): RPL19 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L18A LS 176 Homo sapiens Gene Name(s): RPL18A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L21 LT 160 Homo sapiens Gene Name(s): RPL21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L22 LU 128 Homo sapiens Gene Name(s): RPL22 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L23 LV 140 Homo sapiens Gene Name(s): RPL23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L24 LW 157 Homo sapiens Gene Name(s): RPL24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L23A LX 156 Homo sapiens Gene Name(s): RPL23A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L26 LY 145 Homo sapiens Gene Name(s): RPL26 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L27 LZ 136 Homo sapiens Gene Name(s): RPL27 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L27A La 148 Homo sapiens Gene Name(s): RPL27A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L29 Lb 159 Homo sapiens Gene Name(s): RPL29 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L30 Lc 115 Homo sapiens Gene Name(s): RPL30 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L31 Ld 125 Homo sapiens Gene Name(s): RPL31 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L32 Le 135 Homo sapiens Gene Name(s): RPL32 Gene View PP9932
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L35A Lf 110 Homo sapiens Gene Name(s): RPL35A Gene View GIG33
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L34 Lg 117 Homo sapiens Gene Name(s): RPL34 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L35 Lh 123 Homo sapiens Gene Name(s): RPL35 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L36 Li 105 Homo sapiens Gene Name(s): RPL36 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L37 Lj 97 Homo sapiens Gene Name(s): RPL37 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L38 Lk 70 Homo sapiens Gene Name(s): RPL38 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L39 Ll 51 Homo sapiens Gene Name(s): RPL39 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UBIQUITIN-60S RIBOSOMAL PROTEIN L40 Lm 128 Homo sapiens Gene Name(s): UBA52 Gene View UBCEP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L41 Ln 25 Homo sapiens Gene Name(s): RPL41 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L36A Lo 106 Homo sapiens Gene Name(s): RPL36A Gene View RPL44 GIG15 MIG6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L37A Lp 92 Homo sapiens Gene Name(s): RPL37A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L28 Lr 137 Homo sapiens Gene Name(s): RPL28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L10A Lz 217 Homo sapiens Gene Name(s): RPL10A Gene View NEDD6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN SA SA 295 Homo sapiens Gene Name(s): RPSA Gene View LAMBR LAMR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S3A SB 264 Homo sapiens Gene Name(s): RPS3A Gene View FTE1 MFTL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S3 SD 243 Homo sapiens EC#: 4.2.99.18 IUBMB
Gene Name(s): RPS3 Gene View OK/SW-cl.26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S4, X ISOFORM SE 263 Homo sapiens Gene Name(s): RPS4X Gene View CCG2 RPS4 SCAR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S5 SF 204 Homo sapiens Gene Name(s): RPS5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S7 SH 194 Homo sapiens Gene Name(s): RPS7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S8 SI 208 Homo sapiens Gene Name(s): RPS8 Gene View OK/SW-cl.83
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S10 SK 165 Homo sapiens Gene Name(s): RPS10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S11 SL 158 Homo sapiens Gene Name(s): RPS11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S15 SP 145 Homo sapiens Gene Name(s): RPS15 Gene View RIG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S16 SQ 146 Homo sapiens Gene Name(s): RPS16 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S17-LIKE SR 135 Homo sapiens Gene Name(s): RPS17 Gene View RPS17L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S18 SS 152 Homo sapiens Gene Name(s): RPS18 Gene View D6S218E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S19 ST 145 Homo sapiens Gene Name(s): RPS19 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S20 SU 119 Homo sapiens Gene Name(s): RPS20 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S21 SV 83 Homo sapiens Gene Name(s): RPS21 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S23 SX 143 Homo sapiens Gene Name(s): RPS23 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S26 Sa 115 Homo sapiens Gene Name(s): RPS26 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S28 Sc 69 Homo sapiens Gene Name(s): RPS28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S29 Sd 56 Homo sapiens Gene Name(s): RPS29 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UBIQUITIN-40S RIBOSOMAL PROTEIN S27A Sf 156 Homo sapiens Gene Name(s): RPS27A Gene View UBA80 UBCEP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 Sg 317 Homo sapiens Gene Name(s): GNB2L1 HLC7 PIG21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S2 SC 293 Homo sapiens Gene Name(s): RPS2 Gene View RPS4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S6 SG 249 Homo sapiens Gene Name(s): RPS6 Gene View OK/SW-cl.2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S9 SJ 194 Homo sapiens Gene Name(s): RPS9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN SM 132 Homo sapiens
40S RIBOSOMAL PROTEIN S13 SN 151 Homo sapiens Gene Name(s): RPS13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S14 SO 151 Homo sapiens Gene Name(s): RPS14 Gene View PRO2640
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S15A SW 130 Homo sapiens Gene Name(s): RPS15A Gene View OK/SW-cl.82
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S24 SY 133 Homo sapiens Gene Name(s): RPS24 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S25 SZ 125 Homo sapiens Gene Name(s): RPS25 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S27 Sb 84 Homo sapiens Gene Name(s): RPS27 Gene View MPS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
40S RIBOSOMAL PROTEIN S30 Se 59 Homo sapiens Gene Name(s): FAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5070-MER) L5 5070 Homo sapiens
RNA (121-MER) L7 121 Homo sapiens
RNA (157-MER) L8 157 Homo sapiens
RNA (1869-MER) S2 1869 Homo sapiens
HUMAN INITIATOR MET-TRNA-I S6 75 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

Lg, Lj, Lm, Lo, Lp, Sa ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L5, L7, L8, LA, LB, LH, LJ, LN, LP, LQ, La, Le, Ll, S2, S6 MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.6 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-03-20
  • Released Date: 2015-06-10
  • Deposition author(s): Khatter, H., Myasnikov, A.G., Natchiar, S.K., Klaholz, B.P.

Revision History

  • Version 1_0: 2015-06-10

    Type: Initial release

  • Version 1_1: 2015-08-05

    Type: Other