4TZ1
Ensemble refinement of the E502A variant of sacteLam55A from Streptomyces sp. SirexAA-E in complex with laminaritriose
- PDB DOI: https://doi.org/10.2210/pdb4TZ1/pdb
- Classification: HYDROLASE
- Organism(s): Streptomyces sp. SirexAA-E
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2014-07-09 Released: 2015-03-18 
- Funding Organization(s): Department of Energy (DOE, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.124 
- R-Value Work: 0.100 
- R-Value Observed: 0.101 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Re-refinement Note
This entry reflects an alternative modeling of the original data in: 4PEY
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative secreted protein | 549 | Streptomyces sp. SirexAA-E | Mutation(s): 1  Gene Names: SACTE_4363 | ||
UniProt | |||||
Find proteins for G2NFJ9 (Streptomyces sp. (strain SirexAA-E / ActE)) Explore G2NFJ9  Go to UniProtKB:  G2NFJ9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G2NFJ9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.124 
- R-Value Work: 0.100 
- R-Value Observed: 0.101 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.775 | α = 90 |
b = 100.195 | β = 103.49 |
c = 53.862 | γ = 90 |
Software Name | Purpose |
---|---|
PDB_EXTRACT | data extraction |
PHASER | phasing |
PHENIX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-03-18  Deposition Author(s): Bianchetti, C.M., Takasuka, T.E., Yik, E.J., Bergeman, L.F., Fox, B.G.
Funding Organization | Location | Grant Number |
---|---|---|
Department of Energy (DOE, United States) | United States | DE-FC02-07ER64494 |
Revision History (Full details and data files)
- Version 1.0: 2015-03-18
Type: Initial release - Version 1.1: 2015-03-25
Changes: Atomic model, Database references, Derived calculations, Non-polymer description - Version 1.2: 2015-05-20
Changes: Database references - Version 1.3: 2017-09-27
Changes: Advisory, Author supporting evidence, Database references, Derived calculations, Refinement description, Source and taxonomy, Structure summary - Version 1.4: 2019-12-04
Changes: Author supporting evidence, Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary