4TUO

Crystal structure of monoclonal antibody against neuroblastoma associated antigen.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 4TUO

Classification: IMMUNE SYSTEM

Total Structure Weight: 96446.94

Macromolecule Entities
Molecule Chains Length Organism Details
Heavy chain of monoclonal antibody against neuroblastoma associated antigen A, C 214 Mus musculus
Light chain of monoclonal antibody against neuroblastoma associated antigen B, D 220 Mus musculus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

B, D O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NGA
Query on NGA

B, D N-ACETYL-D-GALACTOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-JAJWTYFOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

B, D BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

B BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

D ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.166
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 58.09 α = 107.79
b = 61.09 β = 113.43
c = 65.36 γ = 95.68

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-06-24
  • Released Date: 2015-07-15
  • Deposition author(s): Golik, P., Grudnik, P., Horwacik, I., Zdzalik, M., Rokita, H., Dubin, G.

Revision History

  • Version 1_0: 2015-07-15

    Type: Initial release

  • Version 1_1: 2015-07-29

    Type: Database references

  • Version 1_2: 2015-10-14

    Type: Database references