4S1Q

Crystal structure of a VRC01-lineage antibody, 45-VRC01.H03+06.D-001739, in complex with clade A/E HIV-1 gp120 core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 4S1Q

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 89998.88

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 gp120 core G 353 Human immunodeficiency virus 1 Fragment: residue 44-492
Gene Name(s): HIV-1 Env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab of VRC01-lineage antibody,45-VRC01.H03+06.D-001739 heavy chain H 234 Homo sapiens Fragment: Fab of VRC01-lineage antibody,45-VRC01.H03+06.D-001739 heavy chain
Fab of VRC01 light chain L 210 Homo sapiens Fragment: Fab of VRC01 light chain

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.219
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 66.18 α = 90.00
b = 78.93 β = 90.00
c = 194.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-14
  • Released Date: 2015-04-22
  • Deposition author(s): Kwon, Y.D., Yang, Y., Zhang, B., Kwong, P.D.

Revision History

  • Version 1_0: 2015-04-22

    Type: Initial release

  • Version 1_1: 2015-05-06

    Type: Database references

  • Version 1_2: 2016-04-27

    Type: Source and taxonomy