4RZ0

Crystal Structure of Plasmodium falciparum putative histone methyltransferase PFL0690c

• PDB DOI: https://doi.org/10.2210/pdb4RZ0/pdb

• Classification: TRANSFERASE
• Organism(s): Plasmodium (Laverania)
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2014-12-17 Released: 2015-01-21 
• Deposition Author(s): Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Ravichandran, M., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., Lin, Y.H., Structural Genomics Consortium (SGC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.275 
• R-Value Work: 0.220 
• R-Value Observed: 0.223 

Literature

Crystal Structure of Plasmodium falciparum putative histone methyltransferase PFL0690c

Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Ravichandran, M., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., Lin, Y.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 33.56 kDa 
• Atom Count: 1,669 
• Modelled Residue Count: 224 
• Deposited Residue Count: 292 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PFL0690c	A, B	146	Plasmodium (Laverania)	Mutation(s): 0  Gene Names: PFAG_03779, PFL0690c
UniProt
Find proteins for W7FLI1 (Plasmodium falciparum Santa Lucia) Explore W7FLI1  Go to UniProtKB:  W7FLI1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	C [auth A], D [auth A], E [auth A], F [auth A], G [auth B], H [auth B], I [auth B]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.49 Å
• R-Value Free: 0.275 
• R-Value Work: 0.220 
• R-Value Observed: 0.223 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.73	α = 90
b = 53.474	β = 90
c = 111.592	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
APS	data collection
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-01-21 
Deposition Author(s): Jiang, D.Q., Tempel, W., Loppnau, P., Graslund, S., He, H., Ravichandran, M., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Hui, R., Hutchinson, A., Lin, Y.H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2015-01-21
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Advisory, Refinement description
• Version 1.2: 2024-02-28
  Changes: Advisory, Data collection, Database references, Refinement description