4RTI

The crystal structure of PsbP from Spinacia oleracea

PDB DOI: https://doi.org/10.2210/pdb4RTI/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Spinacia oleracea
Mutation(s): No

Deposited: 2014-11-15 Released: 2015-03-11
Deposition Author(s): Cao, P., Xie, Y., Li, M., Pan, X.W., Zhang, H.M., Zhao, X.L., Su, X.D., Cheng, T., Chang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.228
R-Value Work: 0.176
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure analysis of extrinsic PsbP protein of photosystem II reveals a manganese-induced conformational change.

Cao, P., Xie, Y., Li, M., Pan, X., Zhang, H., Zhao, X., Su, X., Cheng, T., Chang, W.

(2015) Mol Plant 8: 664-666

PubMed: 25704164 Search on PubMed
DOI: https://doi.org/10.1016/j.molp.2015.01.002
Primary Citation of Related Structures:
4RTH, 4RTI

Organizational Affiliation

National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 15th Datun Road, Chaoyang District, Beijing 100101, China.

Macromolecule Content

Total Structure Weight: 20.38 kDa
Atom Count: 1,500
Modelled Residue Count: 175
Deposited Residue Count: 186
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxygen-evolving enhancer protein 2, chloroplastic	A	186	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P12302 (Spinacia oleracea) Explore P12302 Go to UniProtKB: P12302
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12302
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A]	D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]