Macromolecules
Sequence Display for 4R4N

Classification: VIRAL PROTEIN / IMMUNE SYSTEM / INHIBITOR

Total Structure Weight: 713450.38

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 gp120 A, B, E..., I, M, P, S, VA, B, E, I, M, P, S, V 352 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
M48U1 peptide a, b, e..., i, m, p, s, va, b, e, i, m, p, s, v 28 Synthetic construct
Antibody 2.2c LIGHT CHAIN D, G, K..., L, O, R, U, XD, G, K, L, O, R, U, X 210 Homo sapiens
Antibody 2.2c heavy CHAIN C, F, H..., J, N, Q, T, WC, F, H, J, N, Q, T, W 220 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, E, I, M, P, S, V N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001094
Query on PRD_001094
a CD4-MIMETIC MINIPROTEIN M48U1 Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
OAS
Query on OAS
C, F, H, J, N, Q, T, W L-PEPTIDE LINKING C5 H9 N O4 SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.56 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.296
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 112.97 α = 110.58
b = 144.18 β = 92.30
c = 158.35 γ = 99.19

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-08-19
  • Released Date: 2014-11-05
  • Deposition author(s): Acharya, P., Louder, R., Kwong, P.D.

Revision History

  • Version 1_0: 2014-11-05

    Type: Initial release