4PWX

Crystal structure of an ATP-bound Get3-Get4-Get5 complex from S.cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.4 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.270

Literature

Macromolecules
Sequence Display for 4PWX

Classification: TRANSPORT PROTEIN

Total Structure Weight: 159904.22

Macromolecule Entities
Molecule Chains Length Organism Details
ATPase GET3 A, B 356 Saccharomyces cerevisiae EC#: 3.6 IUBMB
Fragment: UNP residues 2-354
Mutation: D57V
Gene Name(s): GET3 ARR4 YDL100C D2371
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Golgi to ER traffic protein 4 C, E 288 Saccharomyces cerevisiae Fragment: UNP residues 11-290
Mutation: K258A, K260A
Gene Name(s): GET4 Gene View YOR164C O3580
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-like protein MDY2 D, F 54 Saccharomyces cerevisiae Fragment: UNP residues 1-54
Gene Name(s): MDY2 GET5 TMA24 YOL111C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.4 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.270
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 166.34 α = 90.00
b = 134.50 β = 113.37
c = 84.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-21
  • Released Date: 2014-04-09
  • Deposition author(s): Gristick, H.B., Clemons Jr., W.M.

Revision History

  • 2014-05-21
    Type: Database references