4PMJ

Crystal structure of a putative oxidoreductase from Sinorhizobium meliloti 1021 in complex with NADP

Structural Biology Knowledgebase: 4PMJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4PMJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 31920.84

Macromolecule Entities
Molecule Chains Length Organism Details
Putative oxidoreductase A 281 Sinorhizobium meliloti EC#: 1.1.1 IUBMB
Gene Name(s): SMc01429

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 44.32 α = 90.00
b = 78.90 β = 90.00
c = 79.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-21
  • Released Date: 2014-06-11
  • Deposition author(s): Gasiorowska, O.A., Shabalin, I.G., Handing, K.B., Szlachta, K., Zimmerman, M.D., Hillerich, B.S., Gizzi, A., Toro, R., Bonanno, J., Seidel, R., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • 2015-08-26
    Type: Data collection | Details: Data collection