4PLZ

Crystal structure of Plasmodium falciparum lactate dehydrogenase mutant W107fA.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.130

Literature

Macromolecules
Sequence Display for 4PLZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 35616.95

Macromolecule Entities
Molecule Chains Length Organism Details
L-lactate dehydrogenase A 322 Plasmodium falciparum EC#: 1.1.1.27 IUBMB
Mutation: W92A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXM
Query on OXM

A OXAMIC ACID
C2 H3 N O3
SOWBFZRMHSNYGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OXM IC50: 92500 - 94400 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.146
  • R-Value Work: 0.130
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 80.53 α = 90.00
b = 86.01 β = 90.00
c = 91.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-20
  • Released Date: 2014-07-02
  • Deposition author(s): Boucher, J.I., Jacobowitz, J.R., Beckett, B.C., Classen, S., Theobald, D.L.

Revision History

  • Version 1_0: 2014-07-02

    Type: Initial release

  • Version 1_1: 2014-07-16

    Type: Database references

  • Version 1_2: 2014-09-24

    Type: Structure summary

  • Version 1_3: 2014-10-01

    Type: Database references

  • Version 2_0: 2017-09-27

    Type: Advisory, Author supporting evidence, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary