4PLG

Crystal structure of ancestral apicomplexan lactate dehydrogenase with oxamate.

Structural Biology Knowledgebase: 4PLG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 4PLG

Classification: OXIDOREDUCTASE

Total Structure Weight: 75017.84

Macromolecule Entities
Molecule Chains Length Organism Details
lactate dehydrogenase A, B 334 Apicomplexa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OXM
Query on OXM

A, B OXAMIC ACID
C2 H3 N O3
SOWBFZRMHSNYGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.167
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 113.68 α = 90.00
b = 143.26 β = 90.00
c = 91.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-16
  • Released Date: 2014-07-02
  • Deposition author(s): Boucher, J.I., Jacobowitz, J.R., Beckett, B.C., Classen, S., Theobald, D.L.

Revision History

  • 2014-10-01
    Type: Citation | Details: Citation
  • 2014-09-24
    Type: Entry authorship | Details: Entry authorship
  • 2014-07-16
    Type: Citation | Details: Citation