4P3D

MT1-MMP:Fab complex (Form II)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 4P3D

Classification: IMMUNE SYSTEM

Total Structure Weight: 98987.47

Macromolecule Entities
Molecule Chains Length Organism Details
Heavy Chain Fab fragment of antibody LEM-2/15 A, H 218 Mus musculus
Light Chain Fab fragment of antibody LEM-2/15 B, L 218 Mus musculus
Matrix metalloproteinase-14 C, M 13 Homo sapiens EC#: 3.4.24.80 IUBMB
Fragment: MT1-MMP V-B loop
Gene Name(s): MMP14 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, H 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B, H, M 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, H CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.158
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 52.90 α = 90.00
b = 96.23 β = 92.36
c = 81.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-03-07
  • Released Date: 2014-12-17
  • Deposition author(s): Rozenberg, H., Udi, Y., Sagi, I.

Revision History

  • Version 1_0: 2014-12-17

    Type: Initial release

  • Version 1_1: 2015-01-14

    Type: Database references

  • Version 1_2: 2015-01-21

    Type: Database references

  • Version 1_3: 2017-09-27

    Type: Advisory, Database references, Derived calculations, Other, Refinement description, Source and taxonomy