4OLW

Crystal structure of antibody VRC07-G54H in complex with clade A/E 93TH057 HIV-1 gp120 core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 4OLW

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 89588.52

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein gp160 G 353 Human immunodeficiency virus 1 Fragment: UNP RESIDUES 43-122, 201-303, 325-486
Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antigen binding fragment of heavy chain: Antibody VRC01 H 228 Homo sapiens
Antigen binding fragment of light chain: Antibody VRC01 L 210 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.196
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.92 α = 90.00
b = 76.22 β = 90.00
c = 197.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-25
  • Released Date: 2014-09-03
  • Deposition author(s): Kwon, Y.D., Kwong, P.D.

Revision History

  • Version 1_0: 2014-09-03

    Type: Initial release

  • Version 1_1: 2014-10-22

    Type: Database references

  • Version 1_2: 2017-08-23

    Type: Refinement description, Source and taxonomy