4OF7
Crystal Structure of SYG-1 D1, Crystal Form 2
- PDB DOI: https://doi.org/10.2210/pdb4OF7/pdb
- Classification: CELL ADHESION
- Organism(s): Caenorhabditis elegans
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2014-01-14 Released: 2014-02-19 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.228 
- R-Value Work: 0.202 
- R-Value Observed: 0.203 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein SYG-1, isoform b | 120 | Caenorhabditis elegans | Mutation(s): 0  Gene Names: CELE_K02E10.8, K02E10.8, syg-1 | ||
UniProt | |||||
Find proteins for B1Q236 (Caenorhabditis elegans) Explore B1Q236  Go to UniProtKB:  B1Q236 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B1Q236 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth B], I [auth C], J [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | E [auth A], G [auth B], H [auth B], K [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.228 
- R-Value Work: 0.202 
- R-Value Observed: 0.203 
- Space Group: I 41 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 129.179 | α = 90 |
b = 129.179 | β = 90 |
c = 141.487 | γ = 90 |
Software Name | Purpose |
---|---|
BOS | data collection |
PHASER | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2014-02-19  Deposition Author(s): Ozkan, E., Garcia, K.C.
Revision History (Full details and data files)
- Version 1.0: 2014-02-19
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary