4OAV

Complete human RNase L in complex with 2-5A (5'-ppp heptamer), AMPPCP and RNA substrate.

Structural Biology Knowledgebase: 4OAV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4OAV

Classification: HYDROLASE / RNA

Total Structure Weight: 163467.41


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RNase L) B, D 699 Homo sapiens EC#: 3.1.26 IUBMB
Mutation: H672N
Gene Name(s): RNASEL Gene View RNS4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*(PO4)P*(PO4)P*AP*AP*AP*AP*(PO4))-2') A, C 7 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PUP
Query on PUP

D (2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin- 1(2H)-yl)-4-hydroxy-2-({[(S)-hydroxy{[(2R,3S,4S)- 4-hydroxy-2-(hydroxymethyl)tetrahydrofuran- 3-yl]oxy}phosphoryl]oxy}methyl)tetrahydrofuran- 3-yl dihydrogen phosphate
C14 H22 N2 O15 P2
CTEYAHSJKMGMOL-HHUJUQMJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACP
Query on ACP

B, D PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PO4
Query on PO4
A, C NON-POLYMER O4 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.61 α = 90.00
b = 160.70 β = 90.00
c = 230.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-06
  • Released Date: 2014-03-12
  • Deposition author(s): Han, Y., Donovan, J., Rath, S., Whitney, G., Chitrakar, A., Korennykh, A.

Revision History

  • 2014-04-02
    Type: Citation | Details: Citation update