4NZR

Crystal structure of the antibody-binding region of Protein M (Protein M TD) in complex with anti-HIV antibody PGT135 Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 4NZR

Classification: IMMUNE SYSTEM / PROTEIN BINDING

Total Structure Weight: 96245.84

Macromolecule Entities
Molecule Chains Length Organism Details
PGT135 heavy chain H 234 Homo sapiens Fragment: Fab
PGT135 light chain L 214 Homo sapiens Fragment: Fab
Protein M TD M 416 Mycoplasma genitalium Fragment: antibody-binding region (UNP residues 74-468)
Gene Name(s): MG281
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

M GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.154
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.60 α = 90.00
b = 87.99 β = 90.00
c = 130.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-12
  • Released Date: 2014-02-19
  • Deposition author(s): Zhu, X., Wilson, I.A.

Revision History

No revisions since initial release