4NWT

Crystal structure of the anti-human NGF Fab APE1531


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 4NWT

Classification: IMMUNE SYSTEM

Total Structure Weight: 50070.54

Macromolecule Entities
Molecule Chains Length Organism Details
APE1531 Ab Fab light chain L 220 Homo sapiens Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
APE1531 Ab Fab heavy chain H 233 Homo sapiens Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

L 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

H TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

H, L ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.150
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 127.72 α = 90.00
b = 64.36 β = 108.67
c = 63.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-06
  • Released Date: 2014-10-22
  • Deposition author(s): Verdino, P., Stanfield, R.L., Wilson, I.A.

Revision History

  • 2014-10-29
    Type: Database references
  • 2014-12-10
    Type: Database references
  • 2017-08-02
    Type: Refinement description, Source and taxonomy