4M75

Crystal structure of Lsm1-7 complex

Structural Biology Knowledgebase: 4M75 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.266

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4M75

Classification: RNA BINDING PROTEIN

Total Structure Weight: 172768.40

Macromolecule Entities
Molecule Chains Length Organism Details
U6 snRNA-associated Sm-like protein Lsm1 A, H 144 Saccharomyces cerevisiae Gene Name(s): LSM1 Gene View SPB8 YJL124C J0714
U6 snRNA-associated Sm-like protein Lsm2 B, I 95 Saccharomyces cerevisiae Mutation: C45S
Gene Name(s): LSM2 Gene View SMX5 SNP3 YBL026W YBL0425
U6 snRNA-associated Sm-like protein Lsm3 C, J 89 Saccharomyces cerevisiae Mutation: C37S, C63S
Gene Name(s): LSM3 Gene View SMX4 USS2 YLR438C-A
U6 snRNA-associated Sm-like protein Lsm6 D, K 86 Saccharomyces cerevisiae Gene Name(s): LSM6 Gene View YDR378C D9481.18
U6 snRNA-associated Sm-like protein Lsm5 E, L 93 Saccharomyces cerevisiae Gene Name(s): LSM5 Gene View YER146W
U6 snRNA-associated Sm-like protein Lsm7 F, M 115 Saccharomyces cerevisiae Gene Name(s): LSM7 Gene View YNL147W N1202 N1780
U6 snRNA-associated Sm-like protein Lsm4 G, N 122 Saccharomyces cerevisiae Gene Name(s): LSM4 Gene View SDB23 USS1 YER112W

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.266
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.67 α = 93.14
b = 67.83 β = 108.21
c = 98.24 γ = 116.30

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-12
  • Released Date: 2013-10-23
  • Deposition author(s): Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yan, C., Shi, Y.

Revision History

  • 2014-02-19
    Type: Citation | Details: Citation update