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Crystal structure of Lsm1-7 complex
4M75
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein
    Structure Weight: 172768.40
    Molecule: U6 snRNA-associated Sm-like protein Lsm1
    Polymer: 1 Type: protein Length: 144
    Chains: A, H
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM1 SPB8 YJL124C J0714
    UniProtKB:   Protein Feature View | Search PDB | P47017  
    Molecule: U6 snRNA-associated Sm-like protein Lsm2
    Polymer: 2 Type: protein Length: 95
    Chains: B, I
    Mutation: C45S
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM2 SMX5 SNP3 YBL026W YBL0425
    UniProtKB:   Protein Feature View | Search PDB | P38203  
    Molecule: U6 snRNA-associated Sm-like protein Lsm3
    Polymer: 3 Type: protein Length: 89
    Chains: C, J
    Mutation: C37S,C63S
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM3 SMX4 USS2 YLR438C-A
    UniProtKB:   Protein Feature View | Search PDB | P57743  
    Molecule: U6 snRNA-associated Sm-like protein Lsm6
    Polymer: 4 Type: protein Length: 86
    Chains: D, K
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM6 YDR378C D9481.18
    UniProtKB:   Protein Feature View | Search PDB | Q06406  
    Molecule: U6 snRNA-associated Sm-like protein Lsm5
    Polymer: 5 Type: protein Length: 93
    Chains: E, L
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM5 YER146W
    UniProtKB:   Protein Feature View | Search PDB | P40089  
    Molecule: U6 snRNA-associated Sm-like protein Lsm7
    Polymer: 6 Type: protein Length: 115
    Chains: F, M
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM7 YNL147W N1202 N1780
    UniProtKB:   Protein Feature View | Search PDB | P53905  
    Molecule: U6 snRNA-associated Sm-like protein Lsm4
    Polymer: 7 Type: protein Length: 122
    Chains: G, N
    Organism Saccharomyces cerevisiae S288c
    Gene Names LSM4 SDB23 USS1 YER112W
    UniProtKB:   Protein Feature View | Search PDB | P40070  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4M77   
    4M78   
    4M7A   
    4M7D   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Zhou, L.,  Hang, J.,  Zhou, Y.,  Wan, R.,  Lu, G.,  Yan, C.,  Shi, Y.

    Deposition:   2013-08-12
    Release:   2013-10-23
    Last Modified (REVDAT):   2014-02-19
     
  •   Revision History    Hide
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    2014-02-19
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.95
    R-Value: 0.267 (obs.)
    R-Free: 0.291
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 66.67 α = 93.14 
    b = 67.83 β = 108.21 
    c = 98.24 γ = 116.30