4M2C

Crystal structure of non-heme iron oxygenase OrfP in complex with Fe and D-Arg


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 4M2C

Classification: OXIDOREDUCTASE

Total Structure Weight: 165270.28

Macromolecule Entities
Molecule Chains Length Organism Details
L-arginine beta-hydroxylase A, B, C, D 364 Streptomyces lavendulae Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAR
Query on DAR

C, D D-ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-SCSAIBSYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.03 α = 90.00
b = 116.37 β = 91.44
c = 95.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-05
  • Released Date: 2014-06-25
  • Deposition author(s): Chang, C.Y., Liu, Y.C., Lyu, S.Y., Wu, C.C., Li, T.L.

Revision History

  • Version 1_0: 2014-06-25

    Type: Initial release