4LLY

Crystal structure of Pertuzumab Clambda Fab with variable and constant domain redesigns (VRD2 and CRD2) at 1.6A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4LLY

Classification: IMMUNE SYSTEM

Total Structure Weight: 144572.09

Macromolecule Entities
Molecule Chains Length Organism Details
mutated Pertuzumab Fab heavy chain A, C 448 Homo sapiens Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
light chain Clambda B, D 212 Homo sapiens Gene Name(s): IGLC3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 52.77 α = 76.88
b = 52.85 β = 84.32
c = 89.48 γ = 85.53

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-09
  • Released Date: 2014-01-29
  • Deposition author(s): Pustilnik, A., Lewis, S.M., Wu, X., Sereno, A., Huang, F., Guntas, G., Leaver-Fay, A., Smith, E.M., Ho, C., Hansen-Estruch, C., Chamberlain, A.K., Truhlar, S.M., Kuhlman, B., Demarest, S.J., Atwell, S.

Revision History

  • Version 1_0: 2014-01-29

    Type: Initial release

  • Version 1_1: 2014-02-12

    Type: Database references

  • Version 1_2: 2014-03-26

    Type: Database references

  • Version 1_3: 2017-11-15

    Type: Refinement description