4LJP

Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4LJP

Classification: LIGASE

Total Structure Weight: 33871.06

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase RNF31 A 223 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: E3 ligase HOIP catalytic core (unp residues 853-1072)
Mutation: H889A
Gene Name(s): RNF31 Gene View ZIBRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polyubiquitin-C B 76 Bos taurus Fragment: unp residues 77-152
Gene Name(s): UBA52 Gene View UBCEP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.176
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 46.00 α = 90.00
b = 46.00 β = 90.00
c = 133.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-05
  • Released Date: 2013-10-16
  • Deposition author(s): Rana, R.R., Stieglitz, B., Koliopoulos, M.G., Morris-Davies, A.C., Christodoulou, E., Howell, S., Brown, N.R., Rittinger, K.

Revision History

  • Version 1_0: 2013-10-16

    Type: Initial release

  • Version 1_1: 2013-11-13

    Type: Database references

  • Version 1_2: 2013-12-18

    Type: Database references

  • Version 1_3: 2014-12-10

    Type: Other

  • Version 1_4: 2017-11-15

    Type: Refinement description