4LDU

Crystal structure of the DNA binding domain of Arabidopsis thaliana auxin response factor 5

Structural Biology Knowledgebase: 4LDU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LDU

Classification: DNA BINDING PROTEIN

Total Structure Weight: 44412.77

Macromolecule Entities
Molecule Chains Length Organism Details
Auxin response factor 5 A 397 Arabidopsis thaliana Fragment: DNA Binding Domain, UNP residues 1-390
Gene Name(s): ARF5 Gene View IAA24 MP At1g19850 F6F9.10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.195
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.61 α = 90.00
b = 91.50 β = 114.28
c = 77.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-25
  • Released Date: 2014-02-12
  • Deposition author(s): Boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

Revision History

No revisions since initial release