4LB5

Crystal structure of PKZ Zalpha in complex with ds(CG)6 (hexagonal form)

Structural Biology Knowledgebase: 4LB5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LB5

Classification: TRANSFERASE / DNA

Total Structure Weight: 21048.05


Macromolecule Entities
Molecule Chains Length Organism Details
Protein kinase containing Z-DNA binding domains A, B 72 Danio rerio EC#: 2.7.11.1 IUBMB
Fragment: Zalpha domain, UNP residues 5-70
Gene Name(s): pkz
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3' C 13 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.188
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.86 α = 90.00
b = 56.86 β = 90.00
c = 218.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-20
  • Released Date: 2013-09-18
  • Deposition author(s): De Rosa, M., Zacarias, S., Athanasiadis, A.

Revision History

  • 2013-12-04
    Type: Citation | Details: Citation update