4KV8
Crystal structure of HIV RT in complex with BILR0355BS
- PDB DOI: https://doi.org/10.2210/pdb4KV8/pdb
- Classification: TRANSFERASE
- Organism(s): HIV-1 M:B_HXB2R
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2013-05-22 Released: 2013-07-31 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.266 
- R-Value Work: 0.229 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HIV Reverse transcriptase P66 | 564 | HIV-1 M:B_HXB2R | Mutation(s): 0  Gene Names: gag-pol, RT EC: 3.1.13.2 | ||
UniProt | |||||
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)) Explore P04585  Go to UniProtKB:  P04585 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04585 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HIV Reverse transcriptase P51 | 442 | HIV-1 M:B_HXB2R | Mutation(s): 0  Gene Names: gag-pol, RT | ||
UniProt | |||||
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)) Explore P04585  Go to UniProtKB:  P04585 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04585 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1WT Query on 1WT | E [auth A] | 11-ethyl-5-methyl-8-[2-(1-oxidanylquinolin-4-yl)oxyethyl]dipyrido[3,2-[1,4]diazepin-6-one C25 H24 N5 O3 PQGWYSJEHPHRGI-UHFFFAOYSA-N | |||
MLA Query on MLA | D [auth A] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 3 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900003 Query on PRD_900003 | C | sucrose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.266 
- R-Value Work: 0.229 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 117.21 | α = 90 |
b = 154.89 | β = 90 |
c = 154.29 | γ = 90 |
Software Name | Purpose |
---|---|
CNX | refinement |
CNX | phasing |
Entry History 
Deposition Data
- Released Date: 2013-07-31  Deposition Author(s): Coulombe, R.
Revision History (Full details and data files)
- Version 1.0: 2013-07-31
Type: Initial release - Version 1.1: 2013-08-07
Changes: Database references - Version 1.2: 2015-04-29
Changes: Non-polymer description - Version 1.3: 2015-05-27
Changes: Other - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-02-28
Changes: Data collection, Database references, Structure summary