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70S Ribosome translocation INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KDH. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S).
DOI:10.2210/pdb4kdg/pdb   NDB ID: NA2474
4KDG
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4KDG   4KDH   4KDJ   4KDK  
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 870760.73
    Molecule: 30S ribosomal protein S2
    Polymer: 1 Type: protein Length: 235
    Chains: B
    Organism Thermus thermophilus HB27
    Gene Names rpsB rps2 TT_C0509
    UniProtKB:   Protein Feature View | Search PDB | P62662  
    Molecule: 30S ribosomal protein S3
    Polymer: 2 Type: protein Length: 207
    Chains: C
    Organism Thermus thermophilus HB27
    Gene Names rpsC rps3 TT_C1322
    UniProtKB:   Protein Feature View | Search PDB | P62663  
    Molecule: 30S ribosomal protein S4
    Polymer: 3 Type: protein Length: 208
    Chains: D
    Organism Thermus thermophilus HB27
    Gene Names rpsD rps4 TT_C1301
    UniProtKB:   Protein Feature View | Search PDB | P62664  
    Molecule: 30S ribosomal protein S5
    Polymer: 4 Type: protein Length: 151
    Chains: E
    Organism Thermus thermophilus HB27
    Gene Names rpsE rps5 TT_C1311
    UniProtKB:   Protein Feature View | Search PDB | P62665  
    Molecule: 30S ribosomal protein S6
    Polymer: 5 Type: protein Length: 101
    Chains: F
    Organism Thermus thermophilus HB27
    Gene Names rpsF rps6 TT_C1740
    UniProtKB:   Protein Feature View | Search PDB | P62666  
    Molecule: 30S ribosomal protein S7
    Polymer: 6 Type: protein Length: 155
    Chains: G
    Organism Thermus thermophilus HB27
    Gene Names rpsG rps7 TT_C1332
    UniProtKB:   Protein Feature View | Search PDB | P62667  
    Molecule: 30S ribosomal protein S8
    Polymer: 7 Type: protein Length: 138
    Chains: H
    Organism Thermus thermophilus HB27
    Gene Names rpsH rps8 TT_C1314
    UniProtKB:   Protein Feature View | Search PDB | P62668  
    Molecule: 30S ribosomal protein S9
    Polymer: 8 Type: protein Length: 127
    Chains: I
    Organism Thermus thermophilus HB27
    Gene Names rpsI rps9 TT_C1100
    UniProtKB:   Protein Feature View | Search PDB | P62669  
    Molecule: 30S ribosomal protein S10
    Polymer: 9 Type: protein Length: 99
    Chains: J
    Organism Thermus thermophilus HB27
    Gene Names rpsJ rps10 TT_C1329
    UniProtKB:   Protein Feature View | Search PDB | P62653  
    Molecule: 30S ribosomal protein S11
    Polymer: 10 Type: protein Length: 119
    Chains: K
    Organism Thermus thermophilus HB27
    Gene Names rpsK rps11 TT_C1302
    UniProtKB:   Protein Feature View | Search PDB | P62654  
    Molecule: 30S ribosomal protein S12
    Polymer: 11 Type: protein Length: 125
    Chains: L
    Organism Thermus thermophilus HB27
    Gene Names rpsL rps12 TT_C1333
    UniProtKB:   Protein Feature View | Search PDB | P61941  
    Molecule: 30S ribosomal protein S13
    Polymer: 12 Type: protein Length: 125
    Chains: M
    Organism Thermus thermophilus HB27
    Gene Names rpsM rps13 TT_C1303
    UniProtKB:   Protein Feature View | Search PDB | P62655  
    Molecule: 30S ribosomal protein S14 type Z
    Polymer: 13 Type: protein Length: 60
    Chains: N
    Organism Thermus thermophilus HB27
    Gene Names rpsZ rps14 rpsN TT_C1315
    UniProtKB:   Protein Feature View | Search PDB | P62656  
    Molecule: 30S ribosomal protein S15
    Polymer: 14 Type: protein Length: 88
    Chains: O
    Organism Thermus thermophilus HB27
    Gene Names rpsO rps15 TT_C0773
    UniProtKB:   Protein Feature View | Search PDB | P62657  
    Molecule: 30S ribosomal protein S16
    Polymer: 15 Type: protein Length: 84
    Chains: P
    Organism Thermus thermophilus HB27
    Gene Names rpsP rps16 TT_C0673
    UniProtKB:   Protein Feature View | Search PDB | P62238  
    Molecule: 30S ribosomal protein S17
    Polymer: 16 Type: protein Length: 100
    Chains: Q
    Organism Thermus thermophilus HB27
    Gene Names rpsQ rps17 TT_C1319
    UniProtKB:   Protein Feature View | Search PDB | P62658  
    Molecule: 30S ribosomal protein S18
    Polymer: 17 Type: protein Length: 70
    Chains: R
    Organism Thermus thermophilus HB27
    Gene Names rpsR rps18 TT_C1742
    UniProtKB:   Protein Feature View | Search PDB | P62659  
    Molecule: 30S ribosomal protein S19
    Polymer: 18 Type: protein Length: 79
    Chains: S
    Organism Thermus thermophilus HB27
    Gene Names rpsS rps19 TT_C1324
    UniProtKB:   Protein Feature View | Search PDB | P62660  
    Molecule: 30S ribosomal protein S20
    Polymer: 19 Type: protein Length: 99
    Chains: T
    Organism Thermus thermophilus HB27
    Gene Names rpsT rps20 TT_C1031
    UniProtKB:   Protein Feature View | Search PDB | P62661  
    Molecule: ribosomal RNA 16S
    Polymer: 20 Type: rna Length: 1511
    Chains: A
    Organism Thermus thermophilus HB27
    Molecule: transfer RNA
    Polymer: 21 Type: rna Length: 77
    Chains: W
    Organism Escherichia coli
    Molecule: messenger RNA
    Polymer: 22 Type: rna Length: 23
    Chains: V
    Organism Thermus thermophilus HB27
    Molecule: Elongation factor G
    Polymer: 23 Type: protein Length: 687
    Chains: Y
    Organism Thermus thermophilus HB27
    Gene Names fusA TT_C1331
    UniProtKB:   Protein Feature View | Search PDB | Q72I01  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FUA
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    FUA C31 H48 O6
    FUSIDIC ACID
    GDP
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    GDP C10 H15 N5 O11 P2
    GUANOSINE-5'-DIPHOSPHATE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2474
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (4KDG and 4KDH)