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Coxsackievirus B3 polymerase elongation complex (r2_Mg_form)
DOI:10.2210/pdb4k4z/pdb   NDB ID: NA2353
4K4Z
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/rna
    Structure Weight: 275121.62
    Molecule: Polyprotein
    Polymer: 1 Type: protein Length: 472
    Chains: A, E, I, M
    Fragment: UNP RESIDUES 1724-2185
    Organism Coxsackievirus B3
    UniProtKB:   Protein Feature View | Search PDB | Q5UEA2  
    Molecule: RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3')
    Polymer: 2 Type: rna Length: 24
    Chains: B, F, J, N
    Molecule: RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3')
    Polymer: 3 Type: rna Length: 14
    Chains: C, G, K, O
    Molecule: RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*A)-3')
    Polymer: 4 Type: rna Length: 9
    Chains: D, H, L, P
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human coxsackievirus b3   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3DDK   
    3OL6   
    4K4S   
    4K4T   
    4K4U   
    4K4V   
    4K4W   
    4K4X   
    4K4Y   
    4K50   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2353
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Gong, P.,  Peersen, O.B.

    Deposition:   2013-04-12
    Release:   2013-05-22
    Last Modified (REVDAT):   2013-07-03
     
  •   Revision History    Hide
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    2013-07-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.17
    R-Value: 0.206 (obs.)
    R-Free: 0.244
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 60.64 α = 89.98 
    b = 60.63 β = 89.92 
    c = 194.68 γ = 78.68