4JZJ

Crystal Structure of Receptor-Fab Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4JZJ

Classification: CYTOKINE RECEPTOR / IMMUNE SYSTEM

Total Structure Weight: 165746.39

Macromolecule Entities
Molecule Chains Length Organism Details
Interleukin-3 receptor subunit alpha C, D 287 Homo sapiens Fragment: DOMAIN 2, DOMAIN 3, UNP residues 20-307
Mutation: N144K, ΔR145, A298V
Gene Name(s): IL3RA Gene View IL3R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab Heavy Chain A, H 221 Mus musculus
Fab Light Chain B, L 220 Mus musculus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

C, D BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

C, D BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

D, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.185
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 88.30 α = 90.00
b = 120.65 β = 97.45
c = 92.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-03
  • Released Date: 2014-04-09
  • Deposition author(s): Broughton, S.E., Parker, M.W.

Revision History

  • Version 1_0: 2014-04-09

    Type: Initial release

  • Version 1_1: 2016-03-16

    Type: Database references

  • Version 1_2: 2017-11-15

    Type: Advisory, Refinement description