4JSR

Crystal Structure of human SIRT3 with ELT inhibitor 11c [N-{2-[1-(6-carbamoylthieno[3,2-d]pyrimidin-4-yl)piperidin-4-yl]ethyl}-N'-ethylthiophene-2,5-dicarboxamide]

Structural Biology Knowledgebase: 4JSR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JSR

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 32164.56

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-dependent protein deacetylase sirtuin-3, mitochondrial A 285 Homo sapiens EC#: 3.5.1 IUBMB
Fragment: UNP residues 118-399
Gene Name(s): SIRT3 Gene View SIR2L3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1NQ
Query on 1NQ

A N-{2-[1-(6-carbamoylthieno[3,2-d]pyrimidin- 4-yl)piperidin-4-yl]ethyl}-N'-ethylthiophene- 2,5-dicarboxamide
C22 H26 N6 O3 S2
IXDTWYVAYLILOL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1NQ IC50: 4 nM (98) BindingDB

IC50: 4 nM  BindingMOAD
IC50: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.198
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.32 α = 90.00
b = 119.32 β = 90.00
c = 44.53 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-22
  • Released Date: 2013-04-24
  • Deposition author(s): Dai, H.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update