4JPI

Crystal structure of a putative VRC01 germline precursor Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 4JPI

Classification: IMMUNE SYSTEM

Total Structure Weight: 99646.74

Macromolecule Entities
Molecule Chains Length Organism Details
Putative VRC01 germline Fab heavy chain A, H 248 Homo sapiens
Putative VRC01 germline Fab light chain B, L 210 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 172.44 α = 90.00
b = 172.44 β = 90.00
c = 92.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-19
  • Released Date: 2013-04-10
  • Deposition author(s): Julien, J.-P., Diwanji, D.C., Jardine, J., Schief, W.R., Wilson, I.A.

Revision History

  • Version 1_0: 2013-04-10

    Type: Initial release

  • Version 1_1: 2013-05-22

    Type: Database references

  • Version 1_2: 2013-09-18

    Type: Source and taxonomy