4JDV

Crystal structure of germ-line precursor of NIH45-46 Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 4JDV

Classification: IMMUNE SYSTEM

Total Structure Weight: 97700.75

Macromolecule Entities
Molecule Chains Length Organism Details
Fab heavy chain A, H 232 Homo sapiens Fragment: NIH45-46 Germ-line HEAVY CHAIN, IG GAMMA-1 CHAIN
Fab light chain B, L 210 Homo sapiens Fragment: NIH45-46 Germ-line Light CHAIN, IG Kappa

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PE
Query on 1PE

H, L PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
144
Query on 144

A, H TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
C4 H12 N O3
DRDCQJADRSJFFD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.96 α = 90.00
b = 70.14 β = 90.00
c = 225.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-03-20
  • Deposition author(s): Diskin, R., Scharf, L., Bjorkman, P.J.

Revision History

  • 2013-05-08
    Type: Database references