RB69 DNA Polymerase L415G Ternary Complex
DOI:10.2210/pdb4j2b/pdb   NDB ID: NA2230
4J2B
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 114584.91
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 901
    Chains: A
    EC#: 2.7.7.7   
    Fragment: RB69 DNA polymerase
    Mutation: L415G, D222A, D327A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
    Molecule: DNA (5'-D(*TP*CP*GP*TP*AP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: T
    Molecule: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3')
    Polymer: 3 Type: dna Length: 13
    Chains: P
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4J2A    
    4J2D    
    4J2E    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ATP
    Search 
    Download 
    ATP C10 H16 N5 O13 P3
    ADENOSINE-5'-TRIPHOSPHATE
    ATP:4J2B
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2230
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Xia, S.,  Wang, J.,  Konigsberg, W.H.

    Deposition:   2013-02-04
    Release:   2014-02-19
    Last Modified (REVDAT):   2014-12-10
     
  •   Revision History    Hide
    Mouse over text for details
    2014-12-10
    Entry authorship
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.04
    R-Value: 0.172 (obs.)
    R-Free: 0.220
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 75.59 α = 90.00 
    b = 120.46 β = 90.00 
    c = 130.87 γ = 90.00