Yeast 20S proteasome in complex with the vinyl sulfone LU122 DOI:10.2210/pdb4int/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/hydrolase Inhibitor Structure Weight: 730851.83 Molecule: Proteasome component Y7 Polymer: 1 Type: protein Length: 250 Chains: A, O EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE8 PRS4 YML092C UniProtKB:   Protein Feature View | Search PDB | P23639     Molecule: Proteasome component Y13 Polymer: 2 Type: protein Length: 258 Chains: B, P EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE9 PRS5 YGR135W UniProtKB:   Protein Feature View | Search PDB | P23638     Molecule: Proteasome component PRE6 Polymer: 3 Type: protein Length: 254 Chains: C, Q EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE6 YOL038W UniProtKB:   Protein Feature View | Search PDB | P40303     Molecule: Proteasome component PUP2 Polymer: 4 Type: protein Length: 260 Chains: D, R EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP2 DOA5 YGR253C G9155 UniProtKB:   Protein Feature View | Search PDB | P32379     Molecule: Proteasome component PRE5 Polymer: 5 Type: protein Length: 234 Chains: E, S EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE5 YMR314W YM9924.06 UniProtKB:   Protein Feature View | Search PDB | P40302     Molecule: Proteasome component C1 Polymer: 6 Type: protein Length: 288 Chains: F, T EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE10 PRC1 PRS1 YOR362C O6650 UniProtKB:   Protein Feature View | Search PDB | P21242     Molecule: Proteasome component C7-alpha Polymer: 7 Type: protein Length: 252 Chains: G, U EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names SCL1 PRC2 PRS2 YGL011C UniProtKB:   Protein Feature View | Search PDB | P21243     Molecule: Proteasome component PUP1 Polymer: 8 Type: protein Length: 232 Chains: H, V EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP1 YOR157C UniProtKB:   Protein Feature View | Search PDB | P25043     Molecule: Proteasome component PUP3 Polymer: 9 Type: protein Length: 205 Chains: I, W EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP3 YER094C UniProtKB:   Protein Feature View | Search PDB | P25451     Molecule: Proteasome component C11 Polymer: 10 Type: protein Length: 198 Chains: J, X EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE1 YER012W UniProtKB:   Protein Feature View | Search PDB | P22141     Molecule: Proteasome component PRE2 Polymer: 11 Type: protein Length: 212 Chains: K, Y EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE2 DOA3 PRG1 YPR103W P8283.10 UniProtKB:   Protein Feature View | Search PDB | P30656     Molecule: Proteasome component C5 Polymer: 12 Type: protein Length: 222 Chains: L, Z EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE7 PRS3 PTS1 YBL041W YBL0407 UniProtKB:   Protein Feature View | Search PDB | P23724     Molecule: Proteasome component PRE4 Polymer: 13 Type: protein Length: 233 Chains: M, a EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE4 YFR050C UniProtKB:   Protein Feature View | Search PDB | P30657     Molecule: Proteasome component PRE3 Polymer: 14 Type: protein Length: 196 Chains: N, b EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE3 YJL001W J1407 UniProtKB:   Protein Feature View | Search PDB | P38624         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast       Related PDB Entries Hide Identifier Details 1RYP  Yeast 20S Proteasome  4INR  Yeast 20S Proteasome in complex with LU102  4INU  Yeast 20S Proteasome in complex with LU112      Biologically Interesting Molecules (BIRD) Hide Identifier Image Name Type Class Chain ID   PRD_000992 Search  HMB-VAL-SER-PHE(4-NH2CH2)-METHYL VINYL SULFONE, BOUND FORM Peptide-like Inhibitor H,K,V,Y   Ligand Explorer     Ligand Chemical Component Hide Identifier Formula Name Interactions 1G5 Search  Download  C28 H40 N4 O7 S HMB-Val-Ser-Phe(4-NH2CH2)-methyl vinyl sulfone, bound form   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 22 Domains - data from Pfam   GO Terms: 249 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Geurink, P.P.,  van der Linden, W.A.,  Mirabella, A.C.,  Gallastegui, N.,  de Bruin, G.,  Blom, A.E.M.,  Voges, M.J.,  Mock, E.D.,  Florea, B.I.,  van der Marel, G.A.,  Driessen, C.,  van der Stelt, M.,  Groll, M.,  Overkleeft, H.S.,  Kisselev, A.F. Deposition:   2013-01-06 Release:   2013-01-30 Last Modified (REVDAT):   2013-02-27     Revision History    Hide Mouse over text for details 2013-02-27 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.90 R-Value: 0.222 (obs.) R-Free: 0.230 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 137.01 α = 90.00  b = 299.51 β = 113.24  c = 145.04 γ = 90.00      Molecule of the Month Hide Ubiquitin